Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011047: Candidatus Phytoplasma mali, complete genome

NCBI: NC_011047

Host Lineage: Phytoplasma mali; Phytoplasma; Acholeplasmataceae; Acholeplasmatales; Tenericutes; Bacteria

General Information: Candidatus Phytoplasma mali strain AT was collected in Heidelberg, Germany from a symptomatic apple tree. Candidatus Phytoplasma mali belongs to a group of mycoplasma-like organisms (Mollicutes) that infect plants and insects. This organism causes the economically significant apple proliferation disease in Europe. This disease is characterized by floral and phloem necrosis, wilting or general plant decline. Candidatus Phytoplasma mali can also infect cherry, apricot and plum trees.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1255208*28174126534Island text1.9659418.270830.5241Neighbours21BLASTN255208.gbk
2416566*44108124516Island text1.4833712.968118.7721Neighbours21BLASTN+416566.gbk
3443475*48738743913Island text2.3498317.316326.3649Neighbours21BLASTN+443475.gbk