Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011027: Chlorobaculum parvum NCIB 8327, complete genome

NCBI: NC_011027

Host Lineage: Chlorobaculum parvum; Chlorobaculum; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: Chlorobaculum parvum, formerly Chlorobium vibrioforme subsp. thiosulfatophilum, is a green sulfur photosynthetic bacterium which contains bacteriochlorophyl d and the caratenoid chlorobactene. This organism grows photolithotrophically using sulfide, sulfur or thiosulfate as electron donors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1136954*15855321600Island text1.6153533.298937.1717Neighbours11BLASTN+IslandViewer 136954.gbk
2303000*33016127162Island text2.2859447.940727.9793Neighbours11BLASTN+IslandViewer 303000.gbk
376022178470024480Island text1.662434.585523.175Neighbours11BLASTN+760221.gbk
4817311*84026122951Island text1.3763334.630350.6456Neighbours11BLASTNIslandViewer 817311.gbk
5858565*88586227298Island text1.8787136.240436.1794Neighbours11BLASTN+IslandViewer 858565.gbk
61024995104873423740Island text1.5922232.769934.1036Neighbours11BLASTN1024995.gbk
71153592*117678623195Island text1.506133.092232.2025Neighbours11BLASTN+IslandViewer 1153592.gbk
81427343144929621954Island text1.6889330.777547.5982Neighbours14BLASTN+1427343.gbk
91488455*150948721033Island text1.6316433.507336.1119Neighbours11BLASTN+IslandViewer 1488455.gbk
101570955*160679635842Island text2.148441.906229.6169Neighbours11BLASTNIslandViewer 1570955.gbk
111763952178259918648Island text1.5362530.651137.2061Neighbours11BLASTN1763952.gbk
121971580201060939030Island text2.1817441.282843.6256Neighbours14BLASTN+IslandViewer 1971580.gbk