Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011026: Chloroherpeton thalassium ATCC 35110, complete genome

NCBI: NC_011026

Host Lineage: Chloroherpeton thalassium; Chloroherpeton; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: Chloroherpeton thalassium is a non-filamentous, flexing and gliding green sulfur bacterium isolated from marine sources off the North East coast of the USA in the 1980s. This organism is the most distant member of the green sulfur bacteria and is commonly found in aquatic microbial mats. Chloroherpeton thalassium is distinct from the other green sulfur bacteria in that it grows as a filamentous rod and is capable of gliding motility. Chloroherpeton thalassium is a photolithotroph, obtaining energy by anoxygenic photosynthesis using sulfide or sulfur as the electron donor. The photosynthetic apparatus consist of membrane-bound iron/sulfur reaction center associated with a light absorbing organelle, the chlorosome.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11181940120477322834Island text1.6629724.801716.5019Neighbours21BLASTN+IslandViewer 1181940.gbk
21284966*131731132346Island text1.5693929.745235.559Neighbours21BLASTN1284966.gbk
31681852*170163619785Island text1.6145927.377221.3656Neighbours35BLASTN+1681852.gbk
42269986*231274742762Island text2.5453933.560526.6229Neighbours21BLASTN+2269986.gbk
52450325248697436650Island text2.3997232.467824.6425Neighbours21BLASTN2450325.gbk
62533017*258460751591Island text2.6843531.922623.6263Neighbours21BLASTN2533017.gbk
72624775265061625842Island text1.4061924.568315.2637Neighbours35BLASTN+2624775.gbk
83009500*304109931600Island text2.7121331.873620.5655Neighbours21BLASTN+3009500.gbk
93044717*306859223876Island text1.5745227.62719.2494Neighbours353044717.gbk