Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011025: Mycoplasma arthritidis 158L3-1, complete genome

NCBI: NC_011025

Host Lineage: Mycoplasma arthritidis; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This organism causes arthritis in both rats and mice. Strains of Mycoplasma arthritidis can be virulent or avirulent depending, in part, on the presence of the MAV1 bacteriophage. This genus currently comprizes more than 120 obligate parasitic species found in the wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucouse membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invation, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most of mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
146903*6683719935Island text3.0461713.255425.8984Neighbours21BLASTNIslandViewer 46903.gbk
2134292*15725622965Island text2.3291114.971128.0655Neighbours21BLASTN+IslandViewer 134292.gbk
3183287*22741244126Island text2.311817.440926.1084Neighbours21BLASTNIslandViewer 183287.gbk
4313897*33283618940Island text2.3407913.332923.7057Neighbours21BLASTNIslandViewer 313897.gbk
5361533*38025018718Island text1.5270513.682519.9994Neighbours21BLASTN+IslandViewer 361533.gbk
638933844288353546Island text2.6784614.43926.9154Neighbours21BLASTNIslandViewer 389338.gbk
7576000*60376727768Island text2.4977815.803828.5616Neighbours21BLASTNIslandViewer 576000.gbk