Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011004: Rhodopseudomonas palustris TIE-1, complete genome

NCBI: NC_011004

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from an iron-rich microbial mat from School Street Marsh in Woods Hole, MA, USA. It grows photoautotrophically with Fe(II), H2, or thiosulfate as the electron donor, photoheterotrophically with a variety of organic carbon sources and chemoheterotrophically in the dark. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11136895*116187724983Island text1.5630526.996722.6208Neighbours11BLASTN+IslandViewer 1136895.gbk
21174813119811023298Island text1.7154725.73516.1456Neighbours11BLASTN+IslandViewer 1174813.gbk
32457778249046532688Island text1.7441322.335320.0069Neighbours11BLASTN+2457778.gbk
42507566*253137523810Island text1.6421626.799625.0761Neighbours11BLASTN+IslandViewer 2507566.gbk
53582078360279020713Island text1.5466221.667329.9103Neighbours11BLASTNIslandViewer 3582078.gbk
64045277406639021114Island text1.4774418.439929.0352Neighbours11BLASTNIslandViewer 4045277.gbk
74073916411759943684Island text1.7801324.314525.1921Neighbours11BLASTN+IslandViewer 4073916.gbk
84183993*422629442302Island text1.6292921.024523.0892Neighbours11BLASTNIslandViewer 4183993.gbk
94947980*497058322604Island text1.4519718.306230.6249Neighbours11BLASTN+4947980.gbk
105283648*530714923502Island text2.2406223.331932.0458Neighbours11BLASTN5283648.gbk
115520771*554678126011Island text2.2058924.404730.4782Neighbours11BLASTN5520771.gbk