Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010995: Cellvibrio japonicus Ueda107, complete genome

NCBI: NC_010995

Host Lineage: Cellvibrio japonicus; Cellvibrio; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Cellvibrio japonicus Ueda107 (NCIMB 10462) was isolated from field soil in Japan and is a common soil microorganism which produces a number of plant cell wall degrading enzymes, such as cellulase and xylanase.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1201815088330703Island text2.044835.738832.0044Neighbours53BLASTNIslandViewer 20181.gbk
2586968306924374Island text1.9605134.451630.8591IslandViewer 58696.gbk
332356236441540854Island text3.6636742.404515.9506Neighbours41BLASTN+IslandViewer 323562.gbk
440457442833623763Island text1.5331934.30245.8521Neighbours53BLASTN+IslandViewer 404574.gbk
567138969158220194Island text1.9534634.57237.7634Neighbours53BLASTN+IslandViewer 671389.gbk
6764567*78991125345Island text1.4947832.374853.9225Neighbours13BLASTN+IslandViewer 764567.gbk
794804199218844148Island text2.3899336.505929.117Neighbours53BLASTN+IslandViewer 948041.gbk
81101614112447222859Island text1.4643633.128625.1919Neighbours510BLASTNIslandViewer 1101614.gbk
91139867116646126595Island text3.0996537.881735.0849Neighbours53BLASTNIslandViewer 1139867.gbk
101417329144183324505Island text1.7057532.05917.9323Neighbours41BLASTNIslandViewer 1417329.gbk
111459831*148209922269Island text1.8827729.912533.5242Neighbours53BLASTN+1459831.gbk
121648897*166927620380Island text2.2395134.028527.7927Neighbours53BLASTN+IslandViewer 1648897.gbk
131749054177773928686Island text3.7372840.787827.9829Neighbours41BLASTN+IslandViewer 1749054.gbk
142123909215688032972Island text2.0087331.892723.9957Neighbours53BLASTN+IslandViewer 2123909.gbk
152312901*233336120461Island text1.4878632.572341.0403Neighbours45BLASTN+2312901.gbk
162547164*256843021267Island text1.6595732.027342.8442Neighbours53BLASTN2547164.gbk
172798000282013122132Island text2.0233236.164142.0234Neighbours53BLASTNIslandViewer 2798000.gbk
182855595*294415488560Island text1.6406934.072644.2314Neighbours53BLASTN+2855595.gbk
193197686321961221927Island text2.1346932.42741.3692Neighbours53BLASTNIslandViewer 3197686.gbk
203604695362929524601Island text1.552330.64223.1027Neighbours510+IslandViewer 3604695.gbk
213640913*366036019448Island text1.667831.012950.7005Neighbours45BLASTNIslandViewer 3640913.gbk
223745957*379018344227Island text1.7554531.962827.5797Neighbours41BLASTN+IslandViewer 3745957.gbk
233821327*385020828882Island text2.2465735.47140.7004Neighbours53BLASTNIslandViewer 3821327.gbk
243863373388159918227Island text1.8544130.832530.3478Neighbours53BLASTN+IslandViewer 3863373.gbk
253945339396838923051Island text1.511929.95242.7823Neighbours53BLASTNIslandViewer 3945339.gbk
264083960410912825169Island text2.3535135.397229.9863Neighbours41BLASTNIslandViewer 4083960.gbk
274117963414135923397Island text1.9096731.651630.8463Neighbours41BLASTNIslandViewer 4117963.gbk
284297361432094023580Island text2.5441937.921721.4533Neighbours41BLASTN+IslandViewer 4297361.gbk
294338860436353324674Island text1.6817131.32919.1193Neighbours41BLASTNIslandViewer 4338860.gbk
304403463443058227120Island text1.7796131.941333.3141Neighbours510IslandViewer 4403463.gbk
314460413448409523683Island text3.6181242.156624.6645Neighbours41BLASTN+IslandViewer 4460413.gbk
324525119455888733769Island text2.2841436.755323.875Neighbours41BLASTN+IslandViewer 4525119.gbk