Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010981: Wolbachia pipientis, complete genome

NCBI: NC_010981

Host Lineage: Wolbachia endosymbiont of Culex quinquefasciatus; Wolbachia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This bacterial endosymbiont was isolated from the preblastoderm embryos of the Pel strain of Culex quinquefasciatus mosquitoes. This group of bacteria are associated with a variety of invertebrate species, some as pathogens, some in a symbiotic or other type of relationship. Typically these organisms are transmitted maternally from mother to daughter transovarially (through the egg) although these bacteria can affect their hosts reproductive capabilities in order to enhance transmission. The net outcome is the increase of hosts carrying the bacteria in the next generation, thereby increasing transmission.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1242500*29688554386Island text2.949919.814136.5595Neighbours21BLASTN+IslandViewer 242500.gbk
2314745*37175257008Island text3.1377822.201840.4837Neighbours21BLASTN+IslandViewer 314745.gbk
342538745524429858Island text2.2860516.516327.9646Neighbours21BLASTN+IslandViewer 425387.gbk
446846549974331279Island text1.91318.231731.5421Neighbours21BLASTN+468465.gbk
5594197*61271418518Island text1.5752117.511833.844Neighbours21BLASTN594197.gbk
6712843*73077417932Island text1.8131217.129725.9593Neighbours21BLASTN+712843.gbk
71053533*107688523353Island text1.6256717.068929.7844Neighbours21BLASTN1053533.gbk
81111417*113030818892Island text2.1796516.506629.9245Neighbours21BLASTN+1111417.gbk
91243888*127707333186Island text2.092720.925340.574Neighbours21BLASTN1243888.gbk
101371265143248261218Island text2.2478719.321732.717Neighbours21BLASTN+IslandViewer 1371265.gbk