Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010943: Stenotrophomonas maltophilia K279a, complete genome

NCBI: NC_010943

Host Lineage: Stenotrophomonas maltophilia; Stenotrophomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: Stenotrophomonas maltophilia K279a was isolated from blood infection. This species is an uncommon but serious source of infection in patients with breathing tubes such as endotracheal or tracheostomy tubes, or with chronically indwelling urinary catheters. Although the organism can colonize the devices without causing an infection, under certain conditions it can cause pneumonia, urinary tract infections, or an infection of the blood. This organism can also cause infection in immunocompromised patients. It has resistance to many commonly used antibiotics and therefore is often difficult to eradicate. Most strains are resistant to co-trimoxazole.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
192943752228229Island text1.8427818.762226.1603Neighbours11BLASTN+IslandViewer 9294.gbk
2325739*34942023682Island text1.8539721.695420.4305Neighbours11BLASTN+IslandViewer 325739.gbk
349300251859925598Island text2.8353926.542527.4877Neighbours11BLASTN+IslandViewer 493002.gbk
41332243*137790845666Island text1.7839823.714918.8814Neighbours11BLASTN+IslandViewer 1332243.gbk
51379707*140629326587Island text1.4247121.145418.6076Neighbours11BLASTN+IslandViewer 1379707.gbk
61426885145859931715Island text2.3908328.058442.1848Neighbours11BLASTN+IslandViewer 1426885.gbk
71884695191285628162Island text3.6291632.583127.6984Neighbours11BLASTN+IslandViewer 1884695.gbk
81938136195659918464Island text1.5204523.923915.4586Neighbours11BLASTN+IslandViewer 1938136.gbk
92091199211510023902Island text2.0257624.012525.7821Neighbours11BLASTN+IslandViewer 2091199.gbk
102422838245809935262Island text1.7307321.201318.3739Neighbours11BLASTN+IslandViewer 2422838.gbk
112465976248809922124Island text1.5411817.825920.4593Neighbours11BLASTN+IslandViewer 2465976.gbk
122499092252759928508Island text2.1182523.532117.9531Neighbours11BLASTN+IslandViewer 2499092.gbk
132815865283809922235Island text1.7017922.869629.64Neighbours11BLASTNIslandViewer 2815865.gbk
143034366305475820393Island text1.5653320.632319.3885Neighbours11BLASTN+IslandViewer 3034366.gbk
153069082312471055629Island text1.832926.741217.4707Neighbours11BLASTN+IslandViewer 3069082.gbk
164476654449856421911Island text1.7304321.460120.1913Neighbours11BLASTN+IslandViewer 4476654.gbk
174527366454690919544Island text1.5040922.166827.683Neighbours11BLASTN+IslandViewer 4527366.gbk
184550732457350522774Island text2.0911223.940533.8366Neighbours11BLASTN+IslandViewer 4550732.gbk