Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010939: Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete

NCBI: NC_010939

Host Lineage: Actinobacillus pleuropneumoniae; Actinobacillus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: Actinobacillus pleuropneumoniae serovar 7 str. AP76 is a clinical isolated from a pig lung. This organism is an obligate parasite of pigs. The bacterium colonizes and invades the porcine lower respiratory tract and can survive phagocytosis by macrophages, eventually resulting in the death of the macrophage cell. Three RTS toxins, which result in cell damage, are produced by this organism.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132149234388122390Island text1.5707326.181923.8348Neighbours21BLASTN+IslandViewer 321492.gbk
2405477*44742441948Island text1.6379628.479618.4085Neighbours21BLASTN+IslandViewer 405477.gbk
3896500*92159925100Island text1.7076328.899337.4564Neighbours21BLASTN+IslandViewer 896500.gbk
41633000*166140328404Island text4.0058730.595216.9387Neighbours21BLASTN+IslandViewer 1633000.gbk
51809446*183198722542Island text1.4613928.176619.641Neighbours21BLASTN+IslandViewer 1809446.gbk
61920781194452123741Island text1.5632724.87847.71714Neighbours35BLASTN+1920781.gbk
71986263*202856742305Island text1.8364226.882415.7022Neighbours21BLASTN+IslandViewer 1986263.gbk
82085000*210600621007Island text1.6010526.834917.0825Neighbours35BLASTNIslandViewer 2085000.gbk