Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010831: Chlorobium phaeobacteroides BS1, complete genome

NCBI: NC_010831

Host Lineage: Chlorobium phaeobacteroides; Chlorobium; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: Photosynthetic microorganism. This species contains several carotenoids, predominated by isorenieratene and beta-isorenieratene. These are necessary for light harvesting and photoprotection, which are important functions in photosynthesis. This species demonstrates a novel type of carotenoid-mediated photoadaptation induced by the change of theta-end and beta-end carotenoid groups, under various light intensities.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1400006310923110Island text1.4805129.663227.3359Neighbours23BLASTN+IslandViewer 40000.gbk
2173499*19637222874Island text1.4934936.533321.5252Neighbours350BLASTN+173499.gbk
378850081048421985Island text1.5622237.304637.5215Neighbours11BLASTNIslandViewer 788500.gbk
493196196064428684Island text1.5404634.271634.048Neighbours23BLASTN+IslandViewer 931961.gbk
51224000125317729178Island text2.103639.079233.7226Neighbours21BLASTNIslandViewer 1224000.gbk
62078329*211792139593Island text2.1135639.158836.7447Neighbours21BLASTN+IslandViewer 2078329.gbk
72448070*246728219213Island text1.479330.204344.3659Neighbours364BLASTN2448070.gbk