Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010830: Candidatus Amoebophilus asiaticus 5a2, complete genome

NCBI: NC_010830

Host Lineage: Amoebophilus asiaticus; Amoebophilus; Amoebophilaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Candidatus Amoebophilus asiaticus 5a2 is an obligate endosymbiont found in Acanthamoeba sp. TUMSJ-321. This organism is a member of the highly diverse bacterial phylum Bacteroidetes which includes the endosymbiont lineages represented by the sister taxa Candidatus A. asiaticus and Candidatus Cardinium hertigii, a symbiont of arthropods.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1193379*21241919041Island text1.5778717.792429.76Neighbours21BLASTN193379.gbk
238481240877923968Island text1.9315917.801631.6543Neighbours21BLASTN384812.gbk
3475248*51117035923Island text1.9858818.351826.8592Neighbours21BLASTN475248.gbk
463297865409921122Island text1.6880919.943129.385Neighbours21BLASTN632978.gbk
569246971237019902Island text1.4835822.981529.5103Neighbours21BLASTN692469.gbk
6718614*74272524112Island text1.4646119.011432.4948Neighbours21BLASTN718614.gbk
7757854*77900921156Island text2.469918.670133.6003Neighbours21BLASTN757854.gbk
886753288694419413Island text1.5396718.841231.4553Neighbours21BLASTN867532.gbk
992326694501721752Island text1.7377518.148122.8834Neighbours21BLASTN923266.gbk
101038292*106735829067Island text1.6793222.700435.6691Neighbours21BLASTN+1038292.gbk
111069666109801828353Island text1.7453327.595144.0425Neighbours21BLASTN1069666.gbk
121124500114887724378Island text1.8559322.553938.7427Neighbours21BLASTNIslandViewer 1124500.gbk
131171781119624424464Island text2.7655521.682335.3662Neighbours21BLASTN1171781.gbk
141291415131457623162Island text1.4914321.960121.7627Neighbours21BLASTN1291415.gbk
151362822138459921778Island text2.0441220.636632.3019Neighbours21BLASTNIslandViewer 1362822.gbk
161451887*147549723611Island text1.369618.573731.6786Neighbours21BLASTN+1451887.gbk
171543548157244628899Island text1.7739425.039337.9015Neighbours21BLASTN1543548.gbk
181637598165910121504Island text2.1004317.794928.4566Neighbours21BLASTN1637598.gbk
191794559181995325395Island text1.6110921.906131.8169Neighbours21BLASTNIslandViewer 1794559.gbk
201836984*187132134338Island text1.5022720.682325.8019Neighbours21BLASTN1836984.gbk