Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010814: Geobacter lovleyi SZ, complete genome

NCBI: NC_010814

Host Lineage: Geobacter lovleyi; Geobacter; Geobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: Su-Zi Creek sediment was collected near a suburban residential area with no reported contamination in June 2002 near Seoul, South Korea. This species was isolated from creek sediment based on its ability to derive energy from acetate oxidation coupled to tetrachloroethene (PCE)-to-cis-1,2-dichloroethene (cis-DCE) dechlorination.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
140992609221994Island text1.713733.422823.288Neighbours332BLASTN+IslandViewer 4099.gbk
2155834*18064324810Island text1.5338332.800320.1913Neighbours33BLASTN+155834.gbk
319067321013319461Island text1.6016733.225926.1441Neighbours332BLASTN+IslandViewer 190673.gbk
424338429390050517Island text2.4909541.466728.7486Neighbours33BLASTN+IslandViewer 243384.gbk
5294394*31426619873Island text1.4829936.487740.3795Neighbours33BLASTN+IslandViewer 294394.gbk
679421182385429644Island text2.1542538.454330.6133Neighbours53BLASTN+794211.gbk
790319992459921401Island text1.6803732.909837.6553Neighbours332BLASTN+903199.gbk
81336943135545618514Island text1.6000133.576538.2568Neighbours332BLASTN+IslandViewer 1336943.gbk
91390817*141638825572Island text1.8178240.966546.7034BLASTN1390817.gbk
101441327*149159950273Island text1.7960138.803730.7737Neighbours11BLASTN+IslandViewer 1441327.gbk
111551624162182670203Island text3.5326644.258127.4154Neighbours332BLASTN+IslandViewer 1551624.gbk
121739706176801828313Island text1.7573837.362430.3794Neighbours332BLASTN1739706.gbk
132074266209616121896Island text1.9864432.997636.3656Neighbours332BLASTN2074266.gbk
142217153*224709929947Island text2.8135342.086630.1567Neighbours332BLASTN+2217153.gbk
152275199*231536040162Island text1.6081334.74228.78Neighbours332BLASTN2275199.gbk
162394250243175537506Island text1.7762639.48132.2324Neighbours332BLASTN+IslandViewer 2394250.gbk
172482848252671743870Island text1.5148835.834120.1274Neighbours332BLASTN+IslandViewer 2482848.gbk
182758902*278690628005Island text2.2802741.147228.754Neighbours332BLASTN+2758902.gbk
193048441309610947669Island text2.5556637.943126.3576Neighbours41BLASTN+IslandViewer 3048441.gbk
203332088*335178319696Island text1.5465431.529733.1587Neighbours332BLASTN+3332088.gbk
213474856*349401319158Island text1.539935.159341.7611Neighbours332BLASTN+3474856.gbk
223621215*364980128587Island text1.5130533.888642.1732Neighbours332BLASTN3621215.gbk
233673983369691022928Island text1.4234232.970639.0608Neighbours53BLASTN+3673983.gbk