Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010805: Burkholderia multivorans ATCC 17616 chromosome 2, complete

NCBI: NC_010805

Host Lineage: Burkholderia multivorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from soil enriched with anthranilate at 41C, Berkeley, CA, USA. This species is associated with infections in cystic fibrosis patients. It is an important opportunistic pathogen, colonizing the lungs and associated with a decrease in long-term survival. This species is a member of the Burkholderia cepacia complex, although it does not appear to spread from patient to patient as do the other members of the group.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1530876*56144030565Island text1.4774919.479716.7925Neighbours11BLASTN+530876.gbk
257570964147565767Island text2.1988926.681922.5936Neighbours11BLASTN+IslandViewer 575709.gbk
31576735160409927365Island text2.3357733.519133.9587Neighbours11BLASTN+IslandViewer 1576735.gbk
41642978166935626379Island text1.8768524.805122.2564Neighbours11BLASTN+IslandViewer 1642978.gbk
52432167245765425488Island text2.0667829.098239.7566Neighbours11BLASTNIslandViewer 2432167.gbk