Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010804: Burkholderia multivorans ATCC 17616 chromosome 1, complete

NCBI: NC_010804

Host Lineage: Burkholderia multivorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from soil enriched with anthranilate at 41C, Berkeley, CA, USA. This species is associated with infections in cystic fibrosis patients. It is an important opportunistic pathogen, colonizing the lungs and associated with a decrease in long-term survival. This species is a member of the Burkholderia cepacia complex, although it does not appear to spread from patient to patient as do the other members of the group.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
152000*7319121192Island text1.6216521.724220.0463Neighbours11BLASTN+IslandViewer 52000.gbk
232439635325628861Island text1.9646926.748626.4618Neighbours11BLASTNIslandViewer 324396.gbk
3450130*47811127982Island text2.7967328.036828.5479Neighbours11BLASTN+IslandViewer 450130.gbk
467108170545734377Island text3.9405538.251832.6973Neighbours11BLASTN+IslandViewer 671081.gbk
578222281165029429Island text1.7407520.94620.0778Neighbours11BLASTN+IslandViewer 782222.gbk
6831000*85316922170Island text1.7747122.478116.9247Neighbours11BLASTNIslandViewer 831000.gbk
7996837104668249846Island text1.976327.971117.8867Neighbours11BLASTN+IslandViewer 996837.gbk
81334581*135591721337Island text1.6804519.344920.4288Neighbours11BLASTNIslandViewer 1334581.gbk
92206000*222893422935Island text1.4326418.810819.704Neighbours11BLASTN+IslandViewer 2206000.gbk
102518695254148822794Island text1.6448419.990321.2824Neighbours11BLASTN+2518695.gbk
112808676283109922424Island text2.2033129.751325.8314Neighbours11BLASTN+IslandViewer 2808676.gbk
122960352*297848118130Island text1.5493917.123719.4238Neighbours11BLASTNIslandViewer 2960352.gbk