Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010803: Chlorobium limicola DSM 245, complete genome

NCBI: NC_010803

Host Lineage: Chlorobium limicola; Chlorobium; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: Isolated from Gilroy Hot Spring. The green sulfur bacteria (GSB; Phylum Chlorobi ) are commonly found in illuminated, stratified, and anoxic aquatic environments, sediments, and other sulfide-rich environments including hot springs. This bacterium has been used to model a variety of enzyme and reaction center pathways, including ATP-citrate lyase, isocitrate dehydrogenase, and the reverse Krebs cycle used in photosynthesis. Now called the "reductive carbolic acid cycle", this was found to be the sole carbon dioxide assimilation pathway in other green sulfur bacteria since its discovery.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124270526959926895Island text1.8443841.364224.4223Neighbours23BLASTN+IslandViewer 242705.gbk
230175333129329541Island text2.8060841.862525.0332Neighbours34BLASTN+301753.gbk
348371350809924387Island text1.9172940.13624.1611Neighbours319+483713.gbk
4634497*65433019834Island text1.9955735.968933.5291Neighbours11BLASTN+634497.gbk
51009000103119422195Island text1.5004140.351436.4691NeighboursBLASTN+IslandViewer 1009000.gbk
61132500115901826519Island text3.0763245.592526.5781NeighboursBLASTN+IslandViewer 1132500.gbk
71436397*146341227016Island text2.6995844.852425.7803Neighbours31BLASTN+IslandViewer 1436397.gbk
81573849160198428136Island text2.2879840.568729.9649NeighboursBLASTN+IslandViewer 1573849.gbk
92067539*211492547387Island text2.041743.276531.1953Neighbours31BLASTN+IslandViewer 2067539.gbk
102444120*246459920480Island text1.6197436.227350.4172Neighbours364BLASTN2444120.gbk
112474554250459930046Island text2.4572544.786420.776Neighbours23BLASTN+IslandViewer 2474554.gbk