Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010801: Burkholderia multivorans ATCC 17616 chromosome 3, complete

NCBI: NC_010801

Host Lineage: Burkholderia multivorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from soil enriched with anthranilate at 41C, Berkeley, CA, USA. This species is associated with infections in cystic fibrosis patients. It is an important opportunistic pathogen, colonizing the lungs and associated with a decrease in long-term survival. This species is a member of the Burkholderia cepacia complex, although it does not appear to spread from patient to patient as do the other members of the group.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123843026313424705Island text1.4942422.641116.8961Neighbours11BLASTN238430.gbk
242190645748035575Island text2.1959724.552122.1576Neighbours11BLASTN+IslandViewer 421906.gbk
348160150140619806Island text1.6825621.300517.8463Neighbours11BLASTN+IslandViewer 481601.gbk
450500052310518106Island text1.5642820.811316.2523Neighbours11BLASTN+IslandViewer 505000.gbk
555027059663446365Island text1.8920523.216916.9315Neighbours11BLASTN+IslandViewer 550270.gbk
662934765277123425Island text1.6734422.272921.6053Neighbours11BLASTN+IslandViewer 629347.gbk