Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010794: Methylacidiphilum infernorum V4, complete genome

NCBI: NC_010794

Host Lineage: Methylacidiphilum infernorum; Methylacidiphilum; Methylacidiphilaceae; Methylacidiphilales; Verrucomicrobia; Bacteria

General Information: Methylacidiphilum infernorum V4 was first discovered in Hell's Gate geothermal area in New Zealand. It is extremely acidophilic and is able to utilize methane as sole carbon source.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1303203*34720043998Island text2.3378246.593628.6985Neighbours33BLASTNIslandViewer 303203.gbk
2654748*67451419767Island text1.684125.817741.4058Neighbours32BLASTN654748.gbk
380095184009939149Island text1.7519729.375124.4867Neighbours32BLASTN800951.gbk
4885500*90664821149Island text1.6921231.280445.5293Neighbours32BLASTN885500.gbk
51476494*150417427681Island text3.3133231.68318.876Neighbours211476494.gbk
61673049169658623538Island text1.5724939.342250.2497Neighbours32BLASTN+1673049.gbk
72032793*205759924807Island text1.5587930.824138.1868Neighbours32BLASTN+2032793.gbk
82071858209458822731Island text1.4773130.02819.5273Neighbours32BLASTN+2071858.gbk
92157920218020422285Island text1.5354634.484435.8083Neighbours32BLASTN+2157920.gbk