Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010741: Treponema pallidum subsp. pallidum SS14, complete genome

NCBI: NC_010741

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Treponema pallidum subsp. pallidum SS14 was isolated in 1977 from a patient with secondary syphilis. This strain is less susceptible than the Nichols strain for a number of antibiotics. This organisms is divided into subspecies each of which causes a specific disease. This organism is the causative agent of endemic and venereal syphilis. This sexual transmitted disease was first discovered in Europe at the end of the fifteenth century, however, the causative agent was not identified until 1905. At one time syphilis was the third most commonly reported communicable disease in the USA. Syphilis is characterized by multiple clinical stages and long periods of latent, asymptomatic infection. Although effective therapies have been available since the introduction of penicillin, syphilis remains a global health problem.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112542*3292520384Island text1.7700437.396654.7338Neighbours10BLASTN+12542.gbk
2107370*13087523506Island text1.4126833.949438.5431Neighbours10BLASTN+107370.gbk
354657357623329661Island text1.8382241.582423.0925Neighbours10BLASTN+546573.gbk
474535776827622920Island text1.8870137.247749.0011Neighbours10BLASTN+IslandViewer 745357.gbk
5775000*79478519786Island text1.5989634.314240.9977Neighbours10BLASTN775000.gbk
6949732*97174222011Island text1.7164733.694130.3853Neighbours10BLASTN+949732.gbk