Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010730: Sulfurihydrogenibium sp. YO3AOP1, complete genome

NCBI: NC_010730

Host Lineage: Sulfurihydrogenibium; Sulfurihydrogenibium; Hydrogenothermaceae; Aquificales; Aquificae; Bacteria

General Information: Carbon fixation. Unable to oxidize hydrogen although hydrogen oxidation was thought to be universal in this group. Isolated from near-neutral-pH terrestrial hot springs in Obsidian Pool in Yellowstone National Park, USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1180000*20292122922Island text2.027115.229825.7705Neighbours21BLASTN+180000.gbk
2280784*31468733904Island text2.7143819.637636.8558Neighbours21BLASTN280784.gbk
3346287*37287726591Island text3.0131329.345635.4063Neighbours21BLASTN+346287.gbk
4578493*59849320001Island text1.914815.8524.4914Neighbours21BLASTN578493.gbk
562746565229524831Island text1.8610715.378832.4339Neighbours21BLASTN627465.gbk
6741842*78209940258Island text2.5347624.629231.8351Neighbours21BLASTN+741842.gbk
7813534*84081927286Island text2.6299426.982333.4389Neighbours21BLASTN+813534.gbk
8952574*97119218619Island text2.2372415.975626.6811Neighbours21BLASTN952574.gbk
91211506*123478123276Island text1.692516.252323.2386Neighbours21BLASTN1211506.gbk
101519458*154259723140Island text1.5956716.53717.5905Neighbours21BLASTN1519458.gbk
111724443*174211517673Island text1.7893116.403231.2218Neighbours21BLASTN1724443.gbk