Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010725: Methylobacterium populi BJ001, complete genome

NCBI: NC_010725

Host Lineage: Methylobacterium populi; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This species was isolated from tissue cultures of Populus, the Poplar tree. Colonies are pink to red, and the red pigment is water insoluble. Species of the genus Methylobacterium are strictly aerobic, facultatively methylotrophic, Gram-negative, rod-shaped bacteria that are able to grow on one-carbon compounds (e.g. methanol or methylamine), as well as on a variety of C2, C3 and C4 substrates. Only the type species, Methylobacterium organophilum, has been shown to use methane as the sole source of carbon and energy. Members of the genus are distributed in a wide variety of natural and man-made environments, including soil, air, dust, fresh- and marine water and sediments, water supplies, bathrooms, air-conditioning systems and masonry, and some are opportunistic human pathogens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1356609*37730020692Island text1.5926715.979412.5552Neighbours11BLASTN+IslandViewer 356609.gbk
2594500*62034925850Island text2.8932519.075124.255Neighbours11BLASTN+594500.gbk
3750911*77963428724Island text2.9515519.639221.8939Neighbours11BLASTN+750911.gbk
41003760*103039426635Island text2.9443221.696719.8408Neighbours11BLASTN+1003760.gbk
51419272*148003860767Island text2.6371419.298218.6045Neighbours11BLASTN+IslandViewer 1419272.gbk
62589014*261596126948Island text1.8991119.30915.7517Neighbours11BLASTN+IslandViewer 2589014.gbk
73273261*329669423434Island text1.6267717.16412.0817Neighbours11BLASTNIslandViewer 3273261.gbk
83315007334271327707Island text1.9099120.673119.4677Neighbours11BLASTNIslandViewer 3315007.gbk
93917369*396168844320Island text1.8240916.549213.1265Neighbours11BLASTN+IslandViewer 3917369.gbk
103961981398401922039Island text1.536414.437812.2946Neighbours11BLASTN+IslandViewer 3961981.gbk
113992948402434231395Island text1.6561616.601714.1061Neighbours11BLASTN+IslandViewer 3992948.gbk
124035397*410959974203Island text1.9936117.201414.4432Neighbours11BLASTN+IslandViewer 4035397.gbk
134219500*425012730628Island text3.5286725.06521.0315Neighbours11BLASTN+IslandViewer 4219500.gbk
144511939454748235544Island text1.8210615.959416.6297Neighbours11BLASTN+IslandViewer 4511939.gbk
154618000*464104723048Island text1.9973815.585530.7407Neighbours11BLASTN+4618000.gbk
165217260524017722918Island text1.9081218.878917.4114Neighbours11BLASTN+IslandViewer 5217260.gbk
175491491*552462633136Island text3.1642225.295820.3429Neighbours11BLASTN+IslandViewer 5491491.gbk