Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010717: Xanthomonas oryzae pv. oryzae PXO99A, complete genome

NCBI: NC_010717

Host Lineage: Xanthomonas oryzae; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: This strain is a representative strain of race 6 isolated in the Philippines. This plant pathogen affects rice plants by causing leaf blight, a major problem in Asian countries where rice production occurs on an industrial scale. This organism enters the xylem and spreads throughout the vascular tissue of the plant, which results in wilting of the plant, or to leaf blight if the infection occurs later in development. This genus consists of plant-specific yellow-pigmented microbes, some of which are economically important phytopathogens that devastate crops such as citrus plants, rice, beans, grape, and cotton. These organisms are almost exclusively found associated with their plant hosts and are not found free in the soil. Xanthomonas oryzae contains two pathovars which cause enconomically significant diseases in rice. Xanthomonas oryzae pathovar oryzae causes bacterial leaf blight which is one of the most serious diseases of rice. This disease is common in temperate and tropical areas and can cause significant crop loss.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112950015009920600Island text1.7389721.02331.4167Neighbours11BLASTN+IslandViewer 129500.gbk
21343000136209919100Island text1.5546819.975130.1894Neighbours11BLASTN+IslandViewer 1343000.gbk
31469911149033920429Island text1.6247722.585330.5681Neighbours11BLASTN+1469911.gbk
41551000159217441175Island text1.6229725.547730.7559Neighbours11BLASTN+IslandViewer 1551000.gbk
52360000238719327194Island text1.6322220.509924.2648Neighbours11BLASTN+IslandViewer 2360000.gbk
63256039328025924221Island text1.5731223.039320.4562Neighbours11BLASTN+3256039.gbk
73564955358709922145Island text1.5411519.119618.7696Neighbours11BLASTN+IslandViewer 3564955.gbk
83868000389178823789Island text1.4374922.707938.5674Neighbours11BLASTNIslandViewer 3868000.gbk
93933485396259929115Island text2.7970234.065527.2749Neighbours11BLASTN+IslandViewer 3933485.gbk
104626178*465282826651Island text2.3151624.324534.8533Neighbours11BLASTN+IslandViewer 4626178.gbk
114787750482298935240Island text2.6077629.719531.3139Neighbours11BLASTN+IslandViewer 4787750.gbk
124851000*487555824559Island text2.3995526.949935.2644Neighbours11BLASTN+4851000.gbk