Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010694: Erwinia tasmaniensis, complete genome

NCBI: NC_010694

Host Lineage: Erwinia tasmaniensis; Erwinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Erwinia tasmaniensis Et1/99 (DSM 17950) was isolated from apple flowers in Tasmania, Australia. Erwinia tasmaniensis has been isolated from apple and pear flowers and bark. This organism is not pathogenic to plants and appears to be a common epiphyte, colonizing plant surfaces.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112409924099Island text2.1289440.646831.5437Neighbours41BLASTN+IslandViewer 1.gbk
263654*8609922446Island text1.5204430.319837.0569Neighbours41BLASTN63654.gbk
3436500*46233725838Island text2.3154337.575728.7805Neighbours41BLASTN+IslandViewer 436500.gbk
461498564279627812Island text2.2322235.587634.5449Neighbours51BLASTN+614985.gbk
571550073887123372Island text2.1666434.96819.1385Neighbours41BLASTNIslandViewer 715500.gbk
689196791664424678Island text2.0419434.472729.7989Neighbours41BLASTN+IslandViewer 891967.gbk
796238398280120419Island text1.5716530.092830.6036Neighbours51BLASTN+962383.gbk
81052722108466031939Island text2.0013534.590830.3011Neighbours41BLASTN+IslandViewer 1052722.gbk
91250841127452923689Island text2.0924436.252515.9609Neighbours41BLASTN+IslandViewer 1250841.gbk
101324250134559221343Island text1.5641330.617726.7024Neighbours41BLASTNIslandViewer 1324250.gbk
111502019153332131303Island text3.7365643.578125.4269Neighbours41BLASTN+1502019.gbk
121932126195650024375Island text1.9392230.377629.5103Neighbours41BLASTN+1932126.gbk
131966676198698720312Island text1.7205330.997130.4117Neighbours41BLASTN1966676.gbk
142138000218529147292Island text3.3733244.759726.17Neighbours41BLASTN+IslandViewer 2138000.gbk
152189652*221918829537Island text2.2646137.417923.4211Neighbours51BLASTN+IslandViewer 2189652.gbk
162492378*251782925452Island text2.8201743.151122.9484Neighbours41BLASTN+IslandViewer 2492378.gbk
172565580*259415428575Island text4.345448.158124.0811Neighbours41BLASTN+IslandViewer 2565580.gbk
182716348274009923752Island text1.7774933.126824.0615Neighbours41BLASTN+IslandViewer 2716348.gbk
192971170*300344632277Island text2.0772537.358127.8801Neighbours41BLASTN+IslandViewer 2971170.gbk
203055403307880623404Island text1.9701335.064427.2213Neighbours51BLASTN3055403.gbk
213178842*319909920258Island text2.1195632.914126.8405Neighbours41BLASTN+IslandViewer 3178842.gbk