Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010688: Xanthomonas campestris pv. campestris, complete genome

NCBI: NC_010688

Host Lineage: Xanthomonas campestris; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: This genus consists of plant-specific yellow-pigmented microbes, some of which are economically important phytopathogens that devastate crops such as citrus plants, rice, beans, grape, and cotton. These organisms are almost exclusively found associated with their plant hosts and are not found free in the soil. This species is a major cause of black rot in crucifers, a disease that results in massive tissue degeneration. It also produces an extracellular polysaccharide known as xanthan, which is harvested commercially as a food stabilizing agent for use in industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1694589273823281Island text1.7309221.422121.1102Neighbours11BLASTN+IslandViewer 69458.gbk
214916117820129041Island text2.6672228.751625.0657Neighbours11BLASTN+IslandViewer 149161.gbk
338700041036023361Island text1.9851126.337533.8631Neighbours11BLASTN+IslandViewer 387000.gbk
4449649*47276723119Island text1.6702721.05917.4161Neighbours11BLASTN+449649.gbk
560501862846423447Island text1.5634724.471120.2948Neighbours11BLASTN605018.gbk
6673454*70601432561Island text1.8132621.843519.5665Neighbours11BLASTN+IslandViewer 673454.gbk
71192410*126259970190Island text2.2277927.59325.142Neighbours11BLASTN+IslandViewer 1192410.gbk
81435694145927523582Island text1.4853220.306429.358Neighbours11BLASTN1435694.gbk
91908012196474456733Island text2.3980126.492727.2588Neighbours11BLASTN+IslandViewer 1908012.gbk
102052619207639423776Island text1.6859723.954338.4517Neighbours11BLASTN+2052619.gbk
112400471*242735326883Island text2.0060123.175421.201Neighbours11BLASTN+IslandViewer 2400471.gbk
122532929*255774124813Island text1.7366223.310916.1281Neighbours11BLASTN+IslandViewer 2532929.gbk
132781624*283409952476Island text2.0945325.13919.5114Neighbours11BLASTN+IslandViewer 2781624.gbk
142850164287100220839Island text1.6440619.108719.8075Neighbours11BLASTN+2850164.gbk
153030873307137140499Island text1.6136420.4120.9779Neighbours11BLASTN+IslandViewer 3030873.gbk
163229820327221942400Island text2.7682232.054119.4968Neighbours11BLASTN+IslandViewer 3229820.gbk
173487000351009923100Island text1.7595121.270119.369Neighbours11BLASTN+IslandViewer 3487000.gbk
183515885356060044716Island text1.618823.493319.4622Neighbours11BLASTN+IslandViewer 3515885.gbk
193740399376122620828Island text1.5868123.411729.6626Neighbours11BLASTN3740399.gbk
204235528*426665131124Island text1.8566424.879524.8368Neighbours11BLASTNIslandViewer 4235528.gbk
214991410501909927690Island text2.5472125.850322.0464Neighbours11BLASTN+IslandViewer 4991410.gbk