Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010681: Burkholderia phytofirmans PsJN chromosome 1, complete sequence

NCBI: NC_010681

Host Lineage: Burkholderia phytofirmans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia phytofirmans, isolated from surface-sterilized onion roots, is a plant growth-promoting bacterium. Plants inoculated with this organism have larger root systems and are more resistant to pathogens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111969219692Island text1.5145124.416336.9655Neighbours11BLASTN1.gbk
2745879891824332Island text1.6503225.868927.0233Neighbours11BLASTN+IslandViewer 74587.gbk
312164714763125985Island text1.5889424.08220.771Neighbours11BLASTN+IslandViewer 121647.gbk
422141624493823523Island text1.5115325.516828.0972Neighbours11BLASTN+IslandViewer 221416.gbk
593437495309918726Island text1.5279320.888122.3373Neighbours11BLASTNIslandViewer 934374.gbk
61202929122652623598Island text1.4699718.628422.6398Neighbours11BLASTN+IslandViewer 1202929.gbk
71234500126213227633Island text1.6180723.348122.8521Neighbours11BLASTNIslandViewer 1234500.gbk
81325632135109925468Island text2.1010626.375927.2328Neighbours11BLASTN+IslandViewer 1325632.gbk
94299979432980029822Island text1.5498523.989421.6325Neighbours11BLASTN+IslandViewer 4299979.gbk