Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010677: Francisella tularensis subsp. mediasiatica FSC147, complete genome

NCBI: NC_010677

Host Lineage: Francisella tularensis; Francisella; Francisellaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: This isolate was collected from a gerbil in central Asia. This organism was first identified by Edward Francis as the causative agent of a plague-like illness that affected squirrels in Tulare county in California in the early part of the 20th century. The organism now bears his name. The disease, which has been noted throughout recorded history, can be transmitted to humans by infected ticks or deerflies, infected meat, or by aerosol, and thus is a potential bioterrorism agent. This organism has a high infectivity rate, and can invade phagocytic and nonphagocytic cells, multiplying rapidly. Once within a macrophage, the organism can escape the phagosome and live in the cytosol. It is an aquatic organism, and can be found living inside protozoans, similar to what is observed with Legionella.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
196470*14828851819Island text1.7704117.196228.915Neighbours21BLASTN+96470.gbk
2214712*24609931388Island text1.6681318.682732.068NeighboursBLASTN214712.gbk
335383937621022372Island text1.673415.807427.549Neighbours21BLASTN353839.gbk
439762942090823280Island text1.6192116.302929.0718Neighbours21BLASTN397629.gbk
5456277*47729321017Island text1.6684616.263429.1071Neighbours21BLASTN456277.gbk
6707881*73076722887Island text1.4623717.710422.4022Neighbours21BLASTN707881.gbk
71296000131657620577Island text1.6256117.239226.7461NeighboursBLASTN1296000.gbk
81621500*165903737538Island text1.8649920.585936.4632Neighbours21BLASTN1621500.gbk
91784000180493420935Island text1.8754916.845529.0187NeighboursBLASTN+1784000.gbk