Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010676: Burkholderia phytofirmans PsJN chromosome 2, complete sequence

NCBI: NC_010676

Host Lineage: Burkholderia phytofirmans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia phytofirmans, isolated from surface-sterilized onion roots, is a plant growth-promoting bacterium. Plants inoculated with this organism have larger root systems and are more resistant to pathogens. Cells are gram-negative, non-sporulating rods that grows in the presence of various sugars. The strain does not produce nitrate or nitrite.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
161098*8675025653Island text1.3182624.665623.1514Neighbours11BLASTN+IslandViewer 61098.gbk
230440532659922195Island text1.6463925.502325.2238Neighbours11BLASTN+IslandViewer 304405.gbk
3897801*91973821938Island text2.2076829.764542.7505Neighbours11BLASTN+897801.gbk
42621496263959918104Island text1.5520722.926837.9857Neighbours11BLASTNIslandViewer 2621496.gbk
52658495270919750703Island text1.5785926.598520.6974Neighbours11BLASTN+IslandViewer 2658495.gbk
62720068275384233775Island text1.636225.910223.7985Neighbours11BLASTN+IslandViewer 2720068.gbk
72793237283212038884Island text1.5347723.970125.0035Neighbours11BLASTN+IslandViewer 2793237.gbk
82869936*289564625711Island text2.1134929.198141.6811Neighbours11BLASTN+IslandViewer 2869936.gbk
92975572299816622595Island text1.4628827.127917.9864Neighbours11BLASTNIslandViewer 2975572.gbk
103009980304723937260Island text2.257533.086123.7241Neighbours11BLASTN+IslandViewer 3009980.gbk