Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010655: Akkermansia muciniphila ATCC BAA-835, complete genome

NCBI: NC_010655

Host Lineage: Akkermansia muciniphila; Akkermansia; Verrucomicrobiaceae; Verrucomicrobiales; Verrucomicrobia; Bacteria

General Information: This organism was isolated from human feces and is able to degrade mucin. Loss of this protective barrier may expose the gastrointestinal epithelial cells to pathogenic microorganisms or to the highly acidic gut environment. Akkermansia muciniphila is a member of the Verrucomicrobia which are also common in soil and water.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137343740239028954Island text3.6087449.938926.9482Neighbours31BLASTN+IslandViewer 373437.gbk
285415287850524354Island text1.7069933.254922.0621Neighbours31BLASTN854152.gbk
31160384*118409923716Island text1.7568232.111329.7707Neighbours31BLASTN1160384.gbk
41365798*139339227595Island text2.6298544.440429.587Neighbours31BLASTN+1365798.gbk
51606901*165451347613Island text1.6870932.897330.2573Neighbours31BLASTN+IslandViewer 1606901.gbk
61808657*182780319147Island text1.5212835.396432.0624Neighbours31BLASTN1808657.gbk
72000025202457424550Island text1.6428929.710724.0036Neighbours31BLASTN+2000025.gbk
82065567*208899123425Island text1.4626128.593134.8033Neighbours31BLASTN+2065567.gbk