Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010645: Bordetella avium 197N, complete genome

NCBI: NC_010645

Host Lineage: Bordetella avium; Bordetella; Alcaligenaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain is a spontaneous nalidixic acid-resistant derivative of virulent strain 197. This group of organisms is capable of invading the respiratory tract of animals and causing severe diseases. They express a number of virulence factors in order to do this including filamentous hemagglutins for attachment, cytotoxins, and proteins that form a type III secretion system for transport of effector molecules into host cells. This organism infects the respiratory tract of birds, and causes bordetellosis in commercially important animals such as turkeys, resulting in devastating losses every year due to secondary infections.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131500*5259921100Island text1.6558424.813825.9715Neighbours11BLASTN31500.gbk
2735739609922527Island text1.5638926.127449.37Neighbours11BLASTN+73573.gbk
327890629929520390Island text1.5504822.74944.8634Neighbours11BLASTN+278906.gbk
436940840678237375Island text1.7764928.087333.6948Neighbours11BLASTN+IslandViewer 369408.gbk
5406794*45127044477Island text1.588625.483931.8755Neighbours11BLASTN+IslandViewer 406794.gbk
6558974*58259923626Island text1.8126228.756839.3077Neighbours11BLASTN558974.gbk
71341475136854027066Island text1.5839128.596228.8756Neighbours11BLASTN+1341475.gbk
81496816151683820023Island text1.5730123.870738.7517Neighbours11BLASTN+IslandViewer 1496816.gbk
91523867154936425498Island text1.585725.139437.709Neighbours11BLASTN+IslandViewer 1523867.gbk
103239420*326166922250Island text1.5654630.569135.3621Neighbours11BLASTNIslandViewer 3239420.gbk
113720501*374549924999Island text1.5313328.956419.1056Neighbours11BLASTN3720501.gbk