Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010627: Burkholderia phymatum STM815 plasmid pBPHY02, complete sequence

NCBI: NC_010627

Host Lineage: Burkholderia phymatum; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from a root nodule of Machaerium lunatum in French Guiana. This species forms a symbiotic relationship with tropical legumes, where it is involved with nirogen fixation in the root nodules.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112796815040322436Island text1.484527.310325.9167Neighbours11BLASTN+127968.gbk
2233572*25652922958Island text1.4339928.933620.3923Neighbours11BLASTN+233572.gbk
346364648759923954Island text1.7731.530124.2197Neighbours11BLASTN+463646.gbk
453240755414621740Island text1.6072930.107621.5722Neighbours11BLASTN532407.gbk