Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010625: Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence

NCBI: NC_010625

Host Lineage: Burkholderia phymatum; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from a root nodule of Machaerium lunatum in French Guiana. This species forms a symbiotic relationship with tropical legumes, where it is involved with nirogen fixation in the root nodules.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122947825334123864Island text1.4942722.683620.4836Neighbours11BLASTN+229478.gbk
267048270099930518Island text1.7635630.422429.3816Neighbours11BLASTN+670482.gbk
31370462139809927638Island text1.5838323.912629.1976Neighbours11BLASTN+1370462.gbk
41415500144906333564Island text1.7627529.165128.5323Neighbours11BLASTN+1415500.gbk
51465603148359917997Island text1.5142427.456233.6704Neighbours11BLASTN+1465603.gbk
61513436153609922664Island text1.6766927.433329.49Neighbours11BLASTN+1513436.gbk
71551430158909937670Island text1.509527.300429.7353Neighbours11BLASTN1551430.gbk
81602191163439132201Island text1.8327829.999834.1729Neighbours11BLASTN+1602191.gbk