Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010623: Burkholderia phymatum STM815 chromosome 2, complete sequence

NCBI: NC_010623

Host Lineage: Burkholderia phymatum; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from a root nodule of Machaerium lunatum in French Guiana. This species forms a symbiotic relationship with tropical legumes, where it is involved with nirogen fixation in the root nodules.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17250010462732128Island text1.5553925.893322.0812Neighbours11BLASTN+IslandViewer 72500.gbk
218814321521527073Island text2.2610730.62638.0651Neighbours11BLASTN+IslandViewer 188143.gbk
31871492194209470603Island text1.9668128.488530.4767Neighbours11BLASTN+IslandViewer 1871492.gbk
41961685204159979915Island text2.0191430.227225.0651Neighbours11BLASTN+IslandViewer 1961685.gbk
52057467208052823062Island text1.5029926.872618.833Neighbours11IslandViewer 2057467.gbk