Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010622: Burkholderia phymatum STM815 chromosome 1, complete sequence

NCBI: NC_010622

Host Lineage: Burkholderia phymatum; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from a root nodule of Machaerium lunatum in French Guiana. This species forms a symbiotic relationship with tropical legumes, where it is involved with nirogen fixation in the root nodules.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1249625*30832658702Island text1.9864231.084624.0411Neighbours11BLASTN+IslandViewer 249625.gbk
22385932240909923168Island text1.8993226.608420.3889Neighbours11BLASTN+IslandViewer 2385932.gbk
32576110260423628127Island text1.9791127.063832.884Neighbours11BLASTN+IslandViewer 2576110.gbk