Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010617: Kocuria rhizophila DC2201, complete genome

NCBI: NC_010617

Host Lineage: Kocuria rhizophila; Kocuria; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Kocuria rhizophila was first isolated from the rhizosphere of the narrow-leaved cattail and is commonly found in water and soil. This organism has also been isolated from human skin and is considered to be part of the normal skin flora.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1554937369118199Island text2.3043211.919411.0367Neighbours11BLASTNIslandViewer 55493.gbk
29200011540023401Island text2.9863216.281115.6708Neighbours11BLASTN+IslandViewer 92000.gbk
326398528723123247Island text2.8528814.048915.438Neighbours11BLASTN+IslandViewer 263985.gbk
455895458907030117Island text3.1768820.74821.0374Neighbours11BLASTN+IslandViewer 558954.gbk
5665830*69497729148Island text1.6043517.765630.0615Neighbours11BLASTN665830.gbk
677491482823353320Island text3.3830721.121118.3671Neighbours11BLASTN+IslandViewer 774914.gbk
7988758101201023253Island text2.3888115.287825.9282Neighbours11BLASTN+IslandViewer 988758.gbk
81397274142856131288Island text4.1016420.062515.9895Neighbours11BLASTN+IslandViewer 1397274.gbk
91428902145226023359Island text1.9180213.317711.6945Neighbours11BLASTN1428902.gbk
101467000*148518718188Island text2.1306213.056315.1906Neighbours11BLASTN+IslandViewer 1467000.gbk
111910388192887618489Island text1.8405213.898317.7184Neighbours11BLASTN+IslandViewer 1910388.gbk
122626000264816022161Island text1.8374412.706716.9631Neighbours11BLASTN+IslandViewer 2626000.gbk