Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010611: Acinetobacter baumannii ACICU, complete genome

NCBI: NC_010611

Host Lineage: Acinetobacter baumannii; Acinetobacter; Moraxellaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Acinetobacter baumannii strain ACICU (also called H34) was isolated from an outbreak in an intensive care unit in Rome, Italy. This bacterium is commonly isolated from the hospital environment and hospitalized patients. It is an aquatic organism, and is often cultured from liquid medical samples such as respiratory secretions, wounds, and urine. Acinetobacter also colonizes irrigating solutions and intravenous solutions. Although it has low virulence, it is capable of causing infection. Most isolates recovered from patients represent colonization rather than infection. When infections do occur, they usually occur in the blood, or in organs with a high fluid content, such as the lungs or urinary tract.Infections by this organism are becoming increasingly problematic due to the high number of resistance genes found in clinical isolates. Some strains are now resistant to all known antibiotics. Most of these genes appear to have been transferred horizontally from other organisms.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131976*5159919624Island text2.3150530.020444.2411Neighbours21BLASTN31976.gbk
2154307*17821523909Island text1.60527.260631.9965Neighbours21BLASTN154307.gbk
3208268*23383425567Island text2.2668932.482243.3285Neighbours21BLASTN+208268.gbk
424083927225731419Island text3.6566948.221726.0559Neighbours42BLASTN+IslandViewer 240839.gbk
5679862*70428624425Island text2.4759732.949742.1032Neighbours21BLASTN679862.gbk
679735182014222792Island text1.5358823.212542.6179Neighbours21BLASTN797351.gbk
73381500*340580324304Island text2.3986732.394344.7927Neighbours21BLASTN3381500.gbk
83413333*343867425342Island text2.4315931.190746.2857Neighbours21BLASTN3413333.gbk
93771778379409922322Island text1.9569123.188223.5717Neighbours21BLASTNIslandViewer 3771778.gbk
103879190*390849929310Island text2.4484830.280346.3108Neighbours21BLASTN+3879190.gbk