Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010610: Lactobacillus fermentum IFO 3956, complete genome

NCBI: NC_010610

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110750013485227353Island text3.6248941.438127.4506Neighbours320BLASTN+IslandViewer 107500.gbk
2269380*29559926220Island text2.4503740.615444.6452Neighbours366BLASTN+IslandViewer 269380.gbk
353579056492629137Island text1.7922640.962645.2978BLASTN+IslandViewer 535790.gbk
4755000*78559930600Island text2.4936339.206222.7634Neighbours21BLASTN+IslandViewer 755000.gbk
579597582885432880Island text2.5965744.83527.3752Neighbours21BLASTN+IslandViewer 795975.gbk
686119488392322730Island text1.4467436.780628.839Neighbours21BLASTN+861194.gbk
790845293309924648Island text2.6655943.143520.0207Neighbours366BLASTN+IslandViewer 908452.gbk
81178430122897750548Island text2.8573141.449923.6118Neighbours366BLASTN+IslandViewer 1178430.gbk
91385066*141573130666Island text3.1145743.162525.9866Neighbours366BLASTN+IslandViewer 1385066.gbk
101580483*162924448762Island text3.8138744.234821.5361Neighbours21BLASTN+IslandViewer 1580483.gbk
111649500167265923160Island text2.7428739.220124.1285Neighbours21BLASTN+1649500.gbk
121765000179344828449Island text2.5645939.830922.8003Neighbours366BLASTN+IslandViewer 1765000.gbk
132013659205177738119Island text3.5953443.080318.9897Neighbours21BLASTN+IslandViewer 2013659.gbk