Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010581: Beijerinckia indica subsp. indica ATCC 9039, complete genome

NCBI: NC_010581

Host Lineage: Beijerinckia indica; Beijerinckia; Beijerinckiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: It produces a water-soluble extracellular polysaccharide that forms a biopolymer useful for a wide range of applications to textile printing, oil and adhesive industries. This organism belongs to the Beijerinckiaceae family, which includes both methanotrophic (bacteria able to oxidize methane) and nonmethanotrophic species (like Beijerinckia indica subsp. indica). Sequencing of strains from this family presents an ideal opportunity for a comparative genomic study into the evolution and biochemistry of obligate methanotrophy.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156157958446422886Island text1.4439925.188526.8242Neighbours11BLASTN+561579.gbk
270962673764828023Island text2.1380836.797232.2786Neighbours11BLASTN+IslandViewer 709626.gbk
393779396390726115Island text1.5230231.204446.3264Neighbours11BLASTN937793.gbk
42943913296366019748Island text1.5908827.33823.7462Neighbours11BLASTN+IslandViewer 2943913.gbk
52999002304648947488Island text3.072340.278621.2731Neighbours11BLASTN+IslandViewer 2999002.gbk
63133547315655923013Island text1.5171431.769726.6681Neighbours11BLASTN3133547.gbk
73387118340538818271Island text1.5162123.075820.0451Neighbours11BLASTNIslandViewer 3387118.gbk