Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010571: Opitutus terrae PB90-1, complete genome

NCBI: NC_010571

Host Lineage: Opitutus terrae; Opitutus; Opitutaceae; Opitutales; Verrucomicrobia; Bacteria

General Information: Opitutus terrae is a member of the Verrucomicrobia, a diverse phylum of organisms common in many terrestrial and aquatic habitats. This organism was isolated from rice paddy soil and has been detected in peat bog soil and other anoxic terrestrial environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163739868013442737Island text2.1945526.481423.7415Neighbours11BLASTN+IslandViewer 637398.gbk
21263309*129229528987Island text1.5242923.513520.776Neighbours11BLASTN+IslandViewer 1263309.gbk
31334000135559921600Island text1.7013426.382825.9634Neighbours11BLASTN1334000.gbk
41459363*148394624584Island text1.5034619.120912.0234Neighbours11BLASTNIslandViewer 1459363.gbk
52041277*206910427828Island text2.5538728.247932.5073Neighbours11BLASTN+2041277.gbk
62423732*244807724346Island text1.6058121.3421.58Neighbours11BLASTN+2423732.gbk
72943369*297798634618Island text2.2454228.262928.6191Neighbours11BLASTN+IslandViewer 2943369.gbk
83322467334823125765Island text1.6226325.095823.7235Neighbours11BLASTN+IslandViewer 3322467.gbk
93903500392173318234Island text1.4967223.309819.7283Neighbours11BLASTNIslandViewer 3903500.gbk
104483500*451059927100Island text2.5910922.386337.7854Neighbours11BLASTNIslandViewer 4483500.gbk
115127812514815720346Island text1.5137322.382717.7458Neighbours11BLASTN+5127812.gbk
125650806567615125346Island text1.6413124.974918.5349Neighbours11BLASTN+IslandViewer 5650806.gbk
135746767577279726031Island text1.8300725.87714.0044Neighbours11BLASTN5746767.gbk