Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010557: Burkholderia ambifaria MC40-6 chromosome 3, complete sequence

NCBI: NC_010557

Host Lineage: Burkholderia ambifaria; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from a cystic fibrosis patient. These bacteria present great versatility to adapt to diverse environments, and are capable of degrading pollutants in water and soil, and fixing atmospheric nitrogen. This species include strains isolated from cystic fibrosis patients as well as strains with potential use in biocontrol.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120784622851620671Island text1.7147518.364514.6135Neighbours11BLASTNIslandViewer 207846.gbk
227494529409919155Island text1.572121.83430.127Neighbours11BLASTN+274945.gbk
331600033917223173Island text1.5003919.072214.6912Neighbours11BLASTN+IslandViewer 316000.gbk
467965674320963554Island text1.8412623.236822.6104Neighbours11BLASTN+IslandViewer 679656.gbk
51030319*105573625418Island text1.6851622.771427.0616Neighbours11BLASTNIslandViewer 1030319.gbk