Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010556: Exiguobacterium sibiricum 255-15, complete genome

NCBI: NC_010556

Host Lineage: Exiguobacterium sibiricum; Exiguobacterium; Bacillales Family XII; Bacillales; Firmicutes; Bacteria

General Information: This organism was isolated from a 2-3 million-year permafrost core in Siberia, Russia and can survive and grow rapidly at low temperatures. Analysis of long-term survival of psychrophilic organisms such as this one may aid understanding of the potential growth of organisms in astrobiology. Exiguobacterium sibiricum is a psychrotolerant organism able to grow at temperatures that range from -6 to 40 degrees C. This organism is also able to survive repeated freeze/thaw cycles which may contribute to its ability to survive in cold environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
16612*2825221641Island text1.5994637.126151.6659Neighbours324BLASTN6612.gbk
226567*4534518779Island text2.4829848.233855.1437Neighbours324BLASTN26567.gbk
371776*9345921684Island text1.7165434.02253.5202Neighbours324BLASTN71776.gbk
4141374*16268521312Island text1.9387137.206452.5068Neighbours324BLASTN+141374.gbk
531699635215735162Island text3.090235.89429.1726Neighbours21BLASTN+IslandViewer 316996.gbk
6462500*48578423285Island text1.7066434.971450.2896Neighbours324BLASTN+462500.gbk
7691498*71146719970Island text1.6620934.093351.407Neighbours324BLASTN+691498.gbk
81292232*132649634265Island text1.8343629.217.4399Neighbours21BLASTN+IslandViewer 1292232.gbk
92328303234984221540Island text2.5082630.309712.4802Neighbours324BLASTN+IslandViewer 2328303.gbk
102581464*261246831005Island text1.6532831.136922.8703Neighbours21BLASTN+IslandViewer 2581464.gbk
112773396*279691823523Island text1.779836.214154.6237Neighbours324BLASTN+2773396.gbk