Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010554: Proteus mirabilis HI4320, complete genome

NCBI: NC_010554

Host Lineage: Proteus mirabilis; Proteus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Proteus mirabilis is a tetracycline resistant human urinary tract isolate. This bacterium is part of the normal gut flora of a healthy individual, but is also an opportunistic pathogen. Flagellar movement allows this organism to travel through the urinary tract into the bladder and kidney where it may cause infection or stones. Cell death is caused by hemolysin, a pore-forming toxin which disrupts osmotic balance across the host cell membrane. This species is inherently resistant to nitrofuran and tetracycline, and some strains have recently become resistant to ampicillin and trimethoprin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153912256136522244Island text1.5725228.686833.3341Neighbours21BLASTN+IslandViewer 539122.gbk
21008444102773319290Island text1.5082229.961140.7236Neighbours21BLASTN+IslandViewer 1008444.gbk
31871000189502424025Island text1.6586229.222144.5813Neighbours21BLASTN+1871000.gbk
42646806272651179706Island text1.9742435.398826.5799Neighbours42BLASTN+IslandViewer 2646806.gbk
52789722*282150731786Island text1.6161744.575438.7296Neighbours41BLASTN+IslandViewer 2789722.gbk
62872000289187219873Island text1.5096340.114336.2864Neighbours41BLASTN+IslandViewer 2872000.gbk