Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010552: Burkholderia ambifaria MC40-6 chromosome 2, complete sequence

NCBI: NC_010552

Host Lineage: Burkholderia ambifaria; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from a cystic fibrosis patient. These bacteria present great versatility to adapt to diverse environments, and are capable of degrading pollutants in water and soil, and fixing atmospheric nitrogen. This species include strains isolated from cystic fibrosis patients as well as strains with potential use in biocontrol.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
158294*10257344280Island text2.536728.769324.5953Neighbours11BLASTN+IslandViewer 58294.gbk
219645721578619330Island text1.4967619.652823.7849Neighbours11BLASTN196457.gbk
329370332259928897Island text2.3630428.041821.8729Neighbours11BLASTNIslandViewer 293703.gbk
433598935658620598Island text1.5265119.690814.1659Neighbours11BLASTN+IslandViewer 335989.gbk
559215461849626343Island text2.1872626.499325.8635Neighbours11BLASTNIslandViewer 592154.gbk
6752007*77809926093Island text1.9266327.528523.3201Neighbours11BLASTNIslandViewer 752007.gbk
71212000123442922430Island text1.4507922.039225.2771Neighbours11BLASTNIslandViewer 1212000.gbk
82089140211228223143Island text1.6510520.60124.5611Neighbours11BLASTN+IslandViewer 2089140.gbk
92131021214958218562Island text1.466521.370419.6431Neighbours11BLASTN+IslandViewer 2131021.gbk
102331486235409922614Island text1.4317924.61730.4909Neighbours11BLASTNIslandViewer 2331486.gbk
112454776248709932324Island text2.3217425.499421.5134Neighbours11BLASTN+IslandViewer 2454776.gbk
122541100256261121512Island text1.68521.52518.4353Neighbours11BLASTN+IslandViewer 2541100.gbk