Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010551: Burkholderia ambifaria MC40-6 chromosome 1, complete sequence

NCBI: NC_010551

Host Lineage: Burkholderia ambifaria; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from a cystic fibrosis patient. These bacteria present great versatility to adapt to diverse environments, and are capable of degrading pollutants in water and soil, and fixing atmospheric nitrogen. This species include strains isolated from cystic fibrosis patients as well as strains with potential use in biocontrol.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
141548744051025024Island text1.6043521.385528.7216NeighboursBLASTNIslandViewer 415487.gbk
284695386809921147Island text1.6022619.888724.4662Neighbours11BLASTN+IslandViewer 846953.gbk
31412139143594323805Island text1.6694123.327330.918Neighbours11BLASTNIslandViewer 1412139.gbk
41462827*148416621340Island text1.6169323.111827.067Neighbours11BLASTN+1462827.gbk
52007926203080722882Island text1.4422619.193821.4094Neighbours11BLASTN+IslandViewer 2007926.gbk
62537876256370525830Island text1.7387721.104520.9116Neighbours11BLASTN+IslandViewer 2537876.gbk