Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010547: Cyanothece sp. ATCC 51142 chromosome linear, complete sequence

NCBI: NC_010547

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Cyanothece sp. ATCC 51142 was isolated from intertidal sands from the Gulf of Mexico in Texas. The marine diazotrophic strain, Cyanothece sp. ATCC 51142, has a robust diurnal cycle in which photosynthesis is performed during the day and nitrogen fixation at night.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1314445481823375Island text1.7370520.762441.6311Neighbours21BLASTN31444.gbk
29833012012821799Island text1.662724.228833.7546Neighbours21BLASTN+98330.gbk
319450021492420425Island text1.4980222.330221.5132Neighbours21194500.gbk