Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010546: Cyanothece sp. ATCC 51142 chromosome circular, complete sequence

NCBI: NC_010546

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Cyanothece sp. ATCC 51142 was isolated from intertidal sands from the Gulf of Mexico in Texas. The marine diazotrophic strain, Cyanothece sp. ATCC 51142, has a robust diurnal cycle in which photosynthesis is performed during the day and nitrogen fixation at night.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155377457628522512Island text1.8517824.687230.9349Neighbours21BLASTN+553774.gbk
2981363100368322321Island text1.7014725.737934.3247Neighbours21BLASTN+981363.gbk
31175979119810222124Island text1.5744130.626423.7127Neighbours21BLASTN+1175979.gbk
41853825187396120137Island text1.6551624.659538.5552Neighbours21BLASTN1853825.gbk
51911366192959918234Island text1.5423523.105134.3069Neighbours21BLASTNIslandViewer 1911366.gbk
62711929273409922171Island text1.400522.397922.9626Neighbours21BLASTN+2711929.gbk
73071377309563124255Island text1.5143434.435837.2396BLASTN3071377.gbk
83583568*360418420617Island text1.5513827.626540.2546Neighbours21BLASTN+3583568.gbk
94144449*416731722869Island text1.7496929.441742.1489Neighbours329BLASTN4144449.gbk
104590994*461086219869Island text1.5324526.607126.473Neighbours21BLASTN4590994.gbk
114786000480938923390Island text1.4556925.711321.8723Neighbours21BLASTN4786000.gbk
124923496494999926504Island text1.5532623.698929.5712Neighbours21BLASTN4923496.gbk