Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010545: Corynebacterium urealyticum DSM 7109, complete genome

NCBI: NC_010545

Host Lineage: Corynebacterium urealyticum; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Corynebacterium urealyticum DSM 7109 (ATCC 43042, NCTC 12011) was isolated from a case of cystitis. Corynebacterium urealyticum is a member of normal human skin and mucosal flora. This organism, however, can colonize the urinary tract causing infections.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111950*6085348904Island text2.213124.675428.2025Neighbours11BLASTN+IslandViewer 11950.gbk
28335310651623164Island text1.6159521.431223.1271Neighbours11BLASTNIslandViewer 83353.gbk
323600026072024721Island text2.9083328.148233.7666Neighbours11BLASTNIslandViewer 236000.gbk
4404111*43329329183Island text1.4097521.716926.2029Neighbours11BLASTN+404111.gbk
561934664304023695Island text2.5553421.479825.1919Neighbours11BLASTN+IslandViewer 619346.gbk
61089286*110901519730Island text1.7649519.617428.7855Neighbours11BLASTN+1089286.gbk
71475410151427238863Island text2.0247525.020228.2153Neighbours11BLASTN+IslandViewer 1475410.gbk
81691999*172113729139Island text3.3120330.128634.2287Neighbours11BLASTN+IslandViewer 1691999.gbk
91729161*175559626436Island text2.0342123.951439.0482Neighbours11BLASTN+IslandViewer 1729161.gbk
101781393*180797326581Island text1.8216928.563618.0034Neighbours11BLASTN+IslandViewer 1781393.gbk
111904162192245318292Island text2.4255619.920419.1193Neighbours11BLASTN+IslandViewer 1904162.gbk
122025000204331318314Island text1.5620620.674234.9068Neighbours11BLASTN2025000.gbk
132204227222609921873Island text2.3930321.590537.3218Neighbours11BLASTN+IslandViewer 2204227.gbk
142229125*225385924735Island text1.9820427.026639.1288Neighbours11BLASTN+IslandViewer 2229125.gbk