Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010544: Candidatus Phytoplasma australiense, complete genome

NCBI: NC_010544

Host Lineage: Phytoplasma australiense; Phytoplasma; Acholeplasmataceae; Acholeplasmatales; Tenericutes; Bacteria

General Information: Phytoplasmas inhabit phloem (food-conducting vascular tissue) sieve elements of plants where they cause a variety of diseases. Transmission between plants is via insects that feed on the phloem. Candidatus Phytoplasma australiense was identified in diseased Chardonnay grapevines from South Australia. Symptoms include a yellowing of the leaves and reduced leaf size, which leads to reduced plant size and lower yields.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122729625207524780Island text3.0037313.667330.4117Neighbours21BLASTN+227296.gbk
226200028481122812Island text2.9257612.983327.5368Neighbours21BLASTN+262000.gbk
3313301*34681633516Island text2.6100717.038235.8886Neighbours21BLASTN+IslandViewer 313301.gbk
436203338819126159Island text2.6340618.459238.628Neighbours21BLASTN+362033.gbk
5395386*41954724162Island text1.8131114.595428.754Neighbours21BLASTN+395386.gbk
645265147609923449Island text3.5909813.858833.1283Neighbours21BLASTN+452651.gbk
7671431*69723925809Island text2.1930821.288529.7312Neighbours21BLASTN+671431.gbk
874389276690423013Island text2.9897513.445430.8929Neighbours21BLASTN+743892.gbk
9816672*83509918428Island text2.4365214.147628.9134Neighbours21BLASTN+816672.gbk
10850502*87932828827Island text2.0968125.2332.677Neighbours21BLASTN850502.gbk