Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010531: Polynucleobacter necessarius STIR1, complete genome

NCBI: NC_010531

Host Lineage: Polynucleobacter necessarius; Polynucleobacter; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain is an obligate intracellular endosymbiont of the cilliate Euplotes aediculatus. This group of organisms is common in freshwater, comprising up to 60% of the bacteria in freshwater habitats. Polynucleobacter species are also known to be endosymbionts of ciliates. These strains live within the cytoplasm and are essential for their host organisms.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1292044*32956237519Island text2.1081830.385423.0535Neighbours21BLASTN292044.gbk
2428000*45088522886Island text1.4935126.507844.0005Neighbours21BLASTN+428000.gbk
370804973271224664Island text1.6902628.911245.4721Neighbours21BLASTN708049.gbk