Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010525: Thermoproteus neutrophilus V24Sta, complete genome

NCBI: NC_010525

Host Lineage: Pyrobaculum neutrophilum; Pyrobaculum; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Hyperthermophilic crenarchaeota. Thermoproteus neutrophilus V24Sta was first isolated from a hot spring in Iceland. This organism is capable of autotrophic growth with sulfur as the electron donor and hydrogen as the electron acceptor, and is also able to grow heterotrophically on organic substrates.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128580532041934615Island text2.5474242.269231.021Neighbours61BLASTN+285805.gbk
242176945592234154Island text2.9551140.223241.8541Neighbours61BLASTN421769.gbk
3500804*52073719934Island text1.66925.68447.1312Neighbours61BLASTN+500804.gbk
4612000*63350721508Island text1.8146228.065632.8016Neighbours61BLASTN612000.gbk
5657574*67615218579Island text1.4993326.033625.405Neighbours61BLASTN657574.gbk
61002733102159918867Island text1.6955326.778350.2071Neighbours61BLASTN1002733.gbk
71041493106266521173Island text1.7519828.193442.711Neighbours61BLASTN1041493.gbk
81177154*119605518902Island text1.5869125.99425.874Neighbours61BLASTN+1177154.gbk
91314999133978224784Island text1.7252431.531829.5564Neighbours61BLASTN+1314999.gbk
101360871*138256621696Island text1.8326628.987527.7531Neighbours61BLASTN+1360871.gbk