Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010524: Leptothrix cholodnii SP-6, complete genome

NCBI: NC_010524

Host Lineage: Leptothrix cholodnii; Leptothrix; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Leptothrix cholodnii SP-6 was isolated from water and flocculent from an artificial iron seep in Ithaca, NY, USA. Leptothrix cholodnii, like other Leptothrix species is an iron- and manganese-oxidizing, sheathed bacterium common in organic rich aquatic environments. Iron oxides and manganese oxides often coat the sheathes of these organisms.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
167421670822934014Island text3.0106627.81325.3476Neighbours11BLASTN+674216.gbk
2824145*84860224458Island text2.1392819.395311.795Neighbours11BLASTN+IslandViewer 824145.gbk
393319195763824448Island text1.4815116.299920.2095Neighbours11BLASTN+933191.gbk
41005355*103237727023Island text2.5126223.75417.7982Neighbours11BLASTN+IslandViewer 1005355.gbk
52117347*214204224696Island text1.9834818.154217.331Neighbours11BLASTN+IslandViewer 2117347.gbk
62530841255411423274Island text2.4079123.689931.5489Neighbours11BLASTN2530841.gbk
72761394*278436822975Island text1.4514918.336624.2539Neighbours11BLASTN+2761394.gbk
83094303*311453120229Island text1.5370221.686520.1973Neighbours11BLASTN+3094303.gbk
93302398332924326846Island text2.4725325.162226.8172Neighbours11BLASTN+3302398.gbk
103391075341365222578Island text2.0512519.556417.7171Neighbours11BLASTN3391075.gbk
113445641346854022900Island text1.8155717.618616.9393Neighbours11BLASTN+IslandViewer 3445641.gbk
123914880393432719448Island text1.5330217.511813.2355Neighbours11BLASTN+3914880.gbk
134402478*442898926512Island text1.6762621.80725.8104Neighbours11BLASTN+4402478.gbk
144644587*468982245236Island text1.7523518.849217.9938Neighbours11BLASTN+IslandViewer 4644587.gbk
154788753481217723425Island text1.9549217.944415.7921Neighbours11BLASTN4788753.gbk