Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010515: Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence

NCBI: NC_010515

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia cenocepacia MC0-3 was isolated from soil associated with maize roots. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
167800069562617627Island text1.7819116.327213.8141Neighbours11BLASTN+IslandViewer 678000.gbk
21124298115292928632Island text1.8332921.61226.1401Neighbours11BLASTN+IslandViewer 1124298.gbk
31205258122726722010Island text1.6139418.597220.9474Neighbours11BLASTN+IslandViewer 1205258.gbk
41375091141715142061Island text1.7441420.57316.4544Neighbours11BLASTN+IslandViewer 1375091.gbk
51428664144787219209Island text1.4976820.890121.7262Neighbours11BLASTN+IslandViewer 1428664.gbk
61491590151491423325Island text1.4562520.440216.4941Neighbours11BLASTNIslandViewer 1491590.gbk
71618093*165515937067Island text1.8244123.59633.5104Neighbours11BLASTNIslandViewer 1618093.gbk
81678487173009951613Island text2.0907425.648924.9081Neighbours11BLASTN+IslandViewer 1678487.gbk
91900967192454423578Island text1.5024219.947720.173Neighbours11BLASTNIslandViewer 1900967.gbk
102037825206218824364Island text1.7089124.849239.26Neighbours11BLASTNIslandViewer 2037825.gbk
112111691217367661986Island text2.3759726.936326.3808Neighbours11BLASTN+IslandViewer 2111691.gbk
122358134238144223309Island text1.9550124.982932.7445Neighbours11BLASTN+2358134.gbk
132449143247210722965Island text1.5222716.710215.5926Neighbours11BLASTN+IslandViewer 2449143.gbk
142691000272570834709Island text2.0493820.305123.0795Neighbours11BLASTN+IslandViewer 2691000.gbk